Publications

  • Xu, Feifei; Jex, Aaron; Svärd, Staffan

    A chromosome-scale reference genome for Giardia intestinalis WB

    Part of Scientific Data, 2020.

    Open access
  • Van der Spoel, David; Henschel, Henning; van Maaren, Paul J.; Ghahremanpour, Mohammad M. et al.

    A potential for molecular simulation of compounds with linear moieties

    Part of Journal of Chemical Physics, 2020.

    Open access
  • Okamoto, Kenta; Ferreira, Ricardo J.; Larsson, Daniel S D; Maia, Filipe R.N.C. et al.

    Acquired Functional Capsid Structures in Metazoan Totivirus-like dsRNA Virus

    Part of Structure, p. 888-+, 2020.

  • Raehtz, Kevin D.; Barrenäs, Fredrik; Xu, Cuiling; Busman-Sahay, Kathleen et al.

    African green monkeys avoid SIV disease progression by preventing intestinal dysfunction and maintaining mucosal barrier integrity

    Part of PLoS Pathogens, 2020.

    Open access
  • Onsbring, Henning; Tice, Alexander K.; Barton, Brandon T.; Brown, Matthew W. et al.

    An efficient single-cell transcriptomics workflow for microbial eukaryotes benchmarked on Giardia intestinalis cells

    Part of BMC Genomics, 2020.

    Open access
  • Henschel, Henning; Van der Spoel, David

    An Intuitively Understandable Quality Measure for Theoretical Vibrational Spectra

    Part of Journal of Physical Chemistry Letters, p. 5471-5475, 2020.

    Open access
  • Rheinbay, Esther; Nielsen, Morten Muhlig; Abascal, Federico; Wala, Jeremiah A. et al.

    Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

    Part of Nature, p. 102-111, 2020.

    Open access
  • Manzetti, Sergio; Trounev, Alexander

    Analytical Solutions for a Supersymmetric Wave‐Equation for Quasiparticles in a Quantum System

    Part of Advanced Theory and Simulations, 2020.

  • Kim, Kyung Hwan; Spah, Alexander; Pathak, Harshad; Yang, Cheolhee et al.

    Anisotropic X-Ray Scattering of Transiently Oriented Water

    Part of Physical Review Letters, 2020.

    Open access
  • Giraldo, Ana M. Villamil; Kasson, P. M.

    Bilayer-Coated Nanoparticles Reveal How Influenza Viral Entry Depends on Membrane Deformability but Not Curvature

    Part of Journal of Physical Chemistry Letters, p. 7190-7196, 2020.

  • Montoliu-Nerin, Merce; Sanchez-Garcia, Marisol; Bergin, Claudia; Grabherr, Manfred et al.

    Building de novo reference genome assemblies of complex eukaryotic microorganisms from single nuclei

    Part of Scientific Reports, 2020.

    Open access
  • Carlevaro-Fita, Joana; Lanzos, Andres; Feuerbach, Lars; Hong, Chen et al.

    Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis

    Part of COMMUNICATIONS BIOLOGY, 2020.

    Open access
  • Munke, Anna; Kimura, Kei; Tomaru, Yuji; Okamoto, Kenta

    Capsid structure of a marine algal virus of the order Picornavirales

    Part of Journal of Virology, 2020.

  • Stairs, Courtney W.; Dharamshi, Jennah; Tamarit, Daniel; Eme, Laura et al.

    Chlamydial contribution to anaerobic metabolism during eukaryotic evolution

    Part of Science Advances, 2020.

    Open access
  • Zhao, Chenyan; Wistrand-Yuen, Pikkei; Lagerbäck, Pernilla; Tängdén, Thomas et al.

    Combination of polymyxin B and minocycline against multidrug-resistant Klebsiella pneumoniae: interaction quantified by pharmacokinetic/pharmacodynamic modelling from in vitro data

    Part of International Journal of Antimicrobial Agents, 2020.

    Open access
  • Socan, Jaka; Purg, Miha; Åqvist, Johan

    Computer simulations explain the anomalous temperature optimum in a cold-adapted enzyme

    Part of Nature Communications, 2020.

    Open access
  • Lewis, William H; Lind, Anders E.; Sendra, Kacper M.; Onsbring Gustafson, Henning et al.

    Convergent Evolution of Hydrogenosomes from Mitochondria by Gene Transfer and Loss

    Part of Molecular biology and evolution, p. 524-539, 2020.

    Open access
  • Rojas-Lopez, Laura; Elwin, Kristin; Chalmers, Rachel M.; Enemark, Heidi L. et al.

    Development of a gp60-subtyping method for Cryptosporidium felis

    Part of Parasites & Vectors, 2020.

    Open access
  • Ballante, Flavio; Rudling, Axel; Zeifman, Alexey; Luttens, Andreas et al.

    Docking Finds GPCR Ligands in Dark Chemical Matter

    Part of Journal of Medicinal Chemistry, p. 613-620, 2020.

  • Manzetti, Sergio; Trounev, Alexander

    Electromagnetic Vorticity in a Square-Well Crystal System Described by a Supersymmetric Wave-Equation

    Part of ADVANCED THEORY AND SIMULATIONS, 2020.

  • Fleetwood, Oliver; Matricon, Pierre; Carlsson, Jens; Delemotte, Lucie

    Energy Landscapes Reveal Agonist Control of G Protein-Coupled Receptor Activation via Microswitches

    Part of Biochemistry, p. 880-891, 2020.

    Open access
  • Gorini, Giacomo; Fourati, Slim; Vaccari, Monica; Rahman, Mohammad Arif et al.

    Engagement of monocytes, NK cells, and CD4(+) Th1 cells by ALVAC-SIV vaccination results in a decreased risk of SIVmac251 vaginal acquisition

    Part of PLoS Pathogens, 2020.

    Open access
  • Reis, Mariana Alves; Matos, Ana M.; Duarte, Noélia; Ahmed, Omar Bauomy et al.

    Epoxylathyrane Derivatives as MDR-Selective Compounds for Disabling Multidrug Resistance in Cancer

    Part of Frontiers in Pharmacology, 2020.

    Open access
  • Vasile, Silvana; Hallberg, Anders; Sallander, Jessica; Hallberg, Mathias et al.

    Evolution of Angiotensin Peptides and Peptidomimetics as Angiotensin II Receptor Type 2 (AT2) Receptor Agonists

    Part of Biomolecules, 2020.

    Open access
  • Fu, Zhirong; Akula, Srinivas; Thorpe, Michael; Hellman, Lars

    Extended Cleavage Specificities of Two Mast Cell Chymase-Related Proteases and One Granzyme B-Like Protease from the Platypus, a Monotreme

    Part of International Journal of Molecular Sciences, 2020.

    Open access
  • Andrikopoulos, Prokopis C.; Liu, Yingliang; Picchiotti, Alessandra; Lenngren, Nils et al.

    Femtosecond-to-nanosecond dynamics of flavin mononucleotide monitored by stimulated Raman spectroscopy and simulations

    Part of Physical Chemistry, Chemical Physics - PCCP, p. 6538-6552, 2020.

  • Wang, Xuesong; Jespers, Willem; Bongers, Brandon J.; Jansen, Maria C. C. Habben et al.

    Full length article Characterization of cancer -related somatic mutations in the adenosine A 2B receptor

    Part of European Journal of Pharmacology, 2020.

  • Almeida, Pedro; Proux-Wera, Estelle; Churcher, Allison; Soler, Lucile et al.

    Genome assembly of the basket willow, Salix viminalis, reveals earliest stages of sex chromosome expansion

    Part of BMC Biology, 2020.

    Open access
  • Peirasmaki, Dimitra; Ma'ayeh, Showgy Y.; Xu, Feifei; Ferella, Marcela et al.

    High Cysteine Membrane Proteins (HCMPs) Are Up-Regulated DuringGiardia-Host Cell Interactions

    Part of Frontiers in Genetics, 2020.

    Open access
  • Halvorsen, Matthew; Huh, Ruth; Oskolkov, Nikolay; Wen, Jia et al.

    Increased burden of ultra-rare structural variants localizing to boundaries of topologically associated domains in schizophrenia

    Part of Nature Communications, 2020.

    Open access
  • Cabrera, Carin C.; Ekstrom, Mattias; Linde, Cecilia; Persson, Hans et al.

    Increased iron absorption in patients with chronic heart failure and iron deficiency

    Part of Journal of Cardiac Failure, p. 440-443, 2020.

    Open access
  • Pabis, Anna; Rawle, Robert J.; Kasson, Peter. M.

    Influenza hemagglutinin drives viral entry via two sequential intramembrane mechanisms

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 7200-7207, 2020.

  • Diamanti, Klev; Visvanathar, Robin; Pereira, Maria J.; Cavalli, Marco et al.

    Integration of whole-body [18F]FDG PET/MRI with non-targeted metabolomics can provide new insights on tissue-specific insulin resistance in type 2 diabetes

    Part of Scientific Reports, 2020.

    Open access
  • Kisgeropoulos, Effie C.; Griese, Julia J.; Smith, Zachary R.; Branca, Rui M. M. et al.

    Key Structural Motifs Balance Metal Binding and Oxidative Reactivity in a Heterobimetallic Mn/Fe Protein

    Part of Journal of the American Chemical Society, p. 5338-5354, 2020.

  • Ge, Xueliang

    Loss of a single methylation in 23S rRNA delays 50S assembly at multiple late stages and impairs translation initiation and elongation

    Part of Proceedings of the National Academy of Sciences of the United States of America, 2020.

  • Wang, Wei

    Loss of a single methylation in 23S rRNA delays 50S assembly at multiple late stages and impairs translation initiation and elongation

    Part of Proceedings of the National Academy of Sciences of the United States of America, 2020.

  • Wang, Wei; Li, Wanqiu; Ge, Xueliang

    Loss of a single methylation in 23S rRNA delays 50S assembly at multiple late stages and impairs translation initiation and elongation

    Part of Proceedings of the National Academy of Sciences of the United States of America, 2020.

  • Barlow, Nicholas; Reddy Vanga, Sudarsana; Sävmarker, Jonas; Sandström, Anja et al.

    Macrocyclic Peptidomimetics as Inhibitors of Insulin-Regulated Aminopeptidase (IRAP)

    Part of RSC Medicinal chemistry, p. 234-244, 2020.

  • Bortot, Leandro Oliveira; Bashardanesh, Zahedeh; Van der Spoel, David

    Making Soup: Preparing and Validating Models of the Bacterial Cytoplasm for Molecular Simulation

    Part of Journal of Chemical Information and Modeling, p. 322-331, 2020.

  • Dharamshi, Jennah E.; Tamarit, Daniel; Eme, Laura; Stairs, Courtney W. et al.

    Marine Sediments Illuminate Chlamydiae Diversity and Evolution

    Part of Current Biology, p. 1032-1048.e7, 2020.

  • Sobolev, Egor; Zolotarev, Serguey; Giewekemeyer, Klaus; Bielecki, Johan et al.

    Megahertz single-particle imaging at the European XFEL

    Part of Communications Physics, 2020.

    Open access
  • Isca, Vera M. S.; Ferreira, Ricardo J.; Garcia, Catarina; Monteiro, Carlos M. et al.

    Molecular Docking Studies of Royleanone Diterpenoids from Plectranthus spp. as P-Glycoprotein Inhibitors

    Part of ACS Medicinal Chemistry Letters, p. 839-845, 2020.

  • Vahed, M.; Ramezani, F.; Tafakori, V.; Mirbagheri, V. S. et al.

    Molecular dynamics simulation and experimental study of the surface-display of SPA protein via Lpp-OmpA system for screening of IgG

    Part of AMB Express, 2020.

    Open access
  • Jiang, Wanghsu; Ubhayasekera, Wimal; Breed, Michael C.; Norsworthy, Allison N. et al.

    MrpH, a new class of metal-binding adhesin, requires zinc to mediate biofilm formation

    Part of PLoS Pathogens, 2020.

    Open access
  • Mallo-Abreu, Ana; Prieto-Diaz, Ruben; Jespers, Willem; Azuaje, Jhonny et al.

    Nitrogen-Walk Approach to Explore Bioisosteric Replacements in a Series of Potent A(2B) Adenosine Receptor Antagonists

    Part of Journal of Medicinal Chemistry, p. 7721-7739, 2020.

  • Hallgren, Jenny; Hellman, Lars; Maurer, Marcus; Nilsson, Gunnar P. et al.

    Novel aspects of mast cell and basophil function: Highlights from the 9th meeting of the European Mast Cell and Basophil Research Network (EMBRN)-A Marcus Wallenberg Symposium

    Part of Allergy. European Journal of Allergy and Clinical Immunology, p. 707-708, 2020.

    Open access
  • Durall de la Fuente, Claudia; Kanchugal Puttaswamy, Sandesh; Selmer, Maria; Lindblad, Peter

    Oligomerization and characteristics of phosphoenolpyruvate carboxylase in Synechococcus PCC 7002

    Part of Scientific Reports, 2020.

    Open access
  • del Valle, Alba; Seip, Britta; Cervera-Marzal, Inaki; Sacheau, Guenael et al.

    Ornithine capture by a translating ribosome controls bacterial polyamine synthesis

    Part of Nature Microbiology, p. 554-+, 2020.

  • Campbell, Peter J.; Diamanti, Klev; Komorowski, Jan; Umer, Husen Muhammad et al.

    Pan-cancer analysis of whole genomes

    Part of Nature, p. 82-93, 2020.

    Open access
  • Morrow, Jennifer L.; Schneider, Daniela, I; Klasson, Lisa; Janitz, Caroline et al.

    Parallel Sequencing of Wolbachia wCer2 from Donor and Novel Hosts Reveals Multiple Incompatibility Factors and Genome Stability after Host Transfers

    Part of Genome Biology and Evolution, p. 720-735, 2020.

    Open access