Publikationer

  • Xu, Feifei; Jex, Aaron; Svärd, Staffan

    A chromosome-scale reference genome for Giardia intestinalis WB

    Ingår i Scientific Data, 2020.

    Open access
  • Rojas-Lopez, Laura; Elwin, Kristin; Chalmers, Rachel M.; Enemark, Heidi L. et al.

    Development of a gp60-subtyping method for Cryptosporidium felis

    Ingår i Parasites & Vectors, 2020.

    Open access
  • Ballante, Flavio; Rudling, Axel; Zeifman, Alexey; Luttens, Andreas et al.

    Docking Finds GPCR Ligands in Dark Chemical Matter

    Ingår i Journal of Medicinal Chemistry, s. 613-620, 2020.

  • Bortot, Leandro Oliveira; Bashardanesh, Zahedeh; Van der Spoel, David

    Making Soup: Preparing and Validating Models of the Bacterial Cytoplasm for Molecular Simulation

    Ingår i Journal of Chemical Information and Modeling, s. 322-331, 2020.

  • Durall de la Fuente, Claudia; Kanchugal Puttaswamy, Sandesh; Selmer, Maria; Lindblad, Peter

    Phosphoenolpyruvate carboxylase in Synechococcus PCC 7002: Oligomerization, structure, and characteristics

    Ingår i Scientific Reports, 2020.

    Open access
  • Fu, Zhirong; Akula, Srinivas; Thorpe, Michael; Hellman, Lars

    Potent and Broad but not Unselective Cleavage of Cytokines and Chemokines by Human Neutrophil Elastase and Proteinase 3

    Ingår i International Journal of Molecular Sciences, 2020.

    Open access
  • Engen, Karin; Reddy Vanga, Sudarsana; Lundbäck, Thomas; Agalo, Faith et al.

    Synthesis, Evaluation and Proposed Binding Pose of Substituted Spiro-Oxindole Dihydroquinazolinones as IRAP Inhibitors

    Ingår i ChemistryOpen, s. 325-337, 2020.

    Open access
  • Ho, Phay J.; Daurer, Benedikt J.; Hantke, Max; Bielecki, Johan et al.

    The role of transient resonances for ultra-fast imaging of single sucrose nanoclusters

    Ingår i Nature Communications, 2020.

    Open access
  • Camsund, Daniel; Lawson, Michael J.; Larsson, Jimmy; Jones, Daniel et al.

    Time-resolved imaging-based CRISPRi screening

    Ingår i Nature Methods, s. 86-92, 2020.

  • Wright, Shane C.; Kozielewicz, Pawel; Kowalski-Jahn, Maria; Petersen, Julian et al.

    A conserved molecular switch in Class F receptors regulates receptor activation and pathway selection

    Ingår i Nature Communications, 2019.

    Open access
  • Rentoft, Matilda; Svensson, Daniel; Sjödin, Andreas; Olason, Pall I. et al.

    A geographically matched control population efficiently limits the number of candidate disease-causing variants in an unbiased whole-genome analysis

    Ingår i PLoS ONE, 2019.

    Open access
  • Hess, Sebastian; Eme, Laura; Roger, Andrew J.; Simpson, Alastair G. B.

    A natural toroidal microswimmer with a rotary eukaryotic flagellum

    Ingår i Nature Microbiology, s. 1620-1626, 2019.

  • Isaksson, Rebecka; Lindman, Jens; Wannberg, Johan; Sallander, Jessica et al.

    A Series of Analogues to the AT2R Prototype Antagonist C38 Allow Fine Tuning of the Previously Reported Antagonist Binding Mode

    Ingår i ChemistryOpen, s. 114-125, 2019.

    Open access
  • Asp, Michaela; Giacomello, Stefania; Larsson, Ludvig; Wu, Chenglin et al.

    A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart

    Ingår i Cell, s. 1647-+, 2019.

  • Wang, Kun; Sybers, David; Maklad, Hassan Ramadan; Lemmens, Liesbeth et al.

    A TetR-family transcription factor regulates fatty acid metabolism in the archaeal model organism Sulfolobus acidocaldarius

    Ingår i Nature Communications, 2019.

    Open access
  • Schulz, J.; Bielecki, J.; Doak, R. B.; Doerner, K. et al.

    A versatile liquid-jet setup for the European XFEL

    Ingår i Journal of Synchrotron Radiation, s. 339-345, 2019.

    Open access
  • Borroto-Escuela, Dasiel O.; Wydra, Karolina; Romero Fernandez, Wilber; Zhou, Zilong et al.

    A2AR Transmembrane 2 Peptide Administration Disrupts the A2AR-A2AR Homoreceptor but Not the A2AR-D2R Heteroreceptor Complex: Lack of Actions on Rodent Cocaine Self-Administration

    Ingår i International Journal of Molecular Sciences, 2019.

    Open access
  • Morgan, Andrew J.; Ayyer, Kartik; Barty, Anton; Chen, Joe P. J. et al.

    Ab initio phasing of the diffraction of crystals with translational disorder

    Ingår i ACTA CRYSTALLOGRAPHICA A: FOUNDATION AND ADVANCES, s. 25 25-40 40, 2019.

    Open access
  • Borroto-Escuela, Dasiel O.; Narváez, Manuel; Romero Fernández, Wilber; Pinton, Luca et al.

    Acute Cocaine Enhances Dopamine D2R Recognition and Signaling and Counteracts D2R Internalization in Sigma1R-D2R Heteroreceptor Complexes

    Ingår i Molecular Neurobiology, s. 7045-7055, 2019.

    Open access
  • Canals, Rocio; Larsson, Disa; Kroger, Carsten; Owen, Sian V. et al.

    Adding function to the genome of African Salmonella Typhimurium ST313 strain D23580

    Ingår i PLoS biology, 2019.

  • Cavalli, Marco; Baltzer, Nicholas; Umer, Husen Muhammad; Grau, Jan et al.

    Allele specific chromatin signals, 3D interactions, and motif predictions for immune and B cell related diseases

    Ingår i Scientific Reports, 2019.

    Open access
  • Schwank, Katrin; Bornemann, Till L., V; Dombrowski, Nina; Spang, Anja et al.

    An archaeal symbiont-host association from the deep terrestrial subsurface

    Ingår i The ISME Journal, s. 2135-2139, 2019.

  • Manzetti, Sergio; Trounev, Alexander

    Analytical Solutions for a Supersymmetric Wave‐Equation for Quasiparticles in a Quantum System

    Ingår i Advanced Theory and Simulations, 2019.

    Open access
  • Moghadam, Behrooz Torabi; Etemadikhah, Mitra; Rajkowska, Grazyna; Stocluneier, Craig et al.

    Analyzing DNA methylation patterns in subjects diagnosed with schizophrenia using machine learning methods

    Ingår i Journal of Psychiatric Research, s. 41-47, 2019.

  • Ferreira, Ricardo J.; Kasson, P. M.

    Antibiotic Uptake Across Gram-Negative Outer Membranes: Better Predictions Towards Better Antibiotics

    Ingår i ACS INFECTIOUS DISEASES, s. 2096 2096-2104 2104, 2019.

  • Seitz, Kiley W.; Dombrowski, Nina; Eme, Laura; Spang, Anja et al.

    Asgard archaea capable of anaerobic hydrocarbon cycling

    Ingår i Nature Communications, 2019.

    Open access
  • Griese, Julia J.; Kositzki, Ramona; Haumann, Michael; Hogbom, Martin

    Assembly of a heterodinuclear Mn/Fe cofactor is coupled to tyrosine-valine ether cross-link formation in the R2-like ligand-binding oxidase

    Ingår i Journal of Biological Inorganic Chemistry, s. 211-221, 2019.

    Open access
  • Clark, David W.; Karlsson, Torgny; Sennblad, Bengt; Gyllensten, Ulf B. et al.

    Associations of autozygosity with a broad range of human phenotypes

    Ingår i Nature Communications, 2019.

    Open access
  • Bysani, Madhusudhan; Agren, Rasmus; Davegardh, Cajsa; Volkov, Petr et al.

    ATAC-seq reveals alterations in open chromatin in pancreatic islets from subjects with type 2 diabetes

    Ingår i Scientific Reports, 2019.

    Open access
  • Burke, Jason R.; La Clair, James J.; Philippe, Ryan N.; Pabis, Anna et al.

    Bifunctional Substrate Activation via an Arginine Residue Drives Catalysis in Chalcone Isomerases

    Ingår i ACS Catalysis, s. 8388-8396, 2019.

  • Johansson, Henrik J.; Socciarelli, Fabio; Vacanti, Nathaniel M.; Haugen, Mads H. et al.

    Breast cancer quantitative proteome and proteogenomic landscape

    Ingår i Nature Communications, 2019.

    Open access
  • Nilsson, Louise K. J.; Rodrigues de Oliveira, Marta; Marinotti, Osvaldo; Matos Rocha, Elerson et al.

    Characterization of Bacterial Communities in Breeding Waters of Anopheles darlingi in Manaus in the Amazon Basin Malaria-Endemic Area

    Ingår i Microbial Ecology, s. 781-791, 2019.

    Open access
  • Kutin, Yury; Kositzki, Ramona; Branca, Rui M.M.; Srinivas, Vivek et al.

    Chemical flexibility of heterobimetallic Mn/Fe cofactors: R2lox and R2c proteins

    Ingår i Journal of Biological Chemistry, s. 18372-18386, 2019.

    Open access
  • Tiukova, Ievgeniia A.; Pettersson, Mats; Höppner, Marc P.; Olsen, Remi-Andre et al.

    Chromosomal genome assembly of the ethanol production strain CBS 11270 indicates a highly dynamic genome structure in the yeast species Brettanomyces bruxellensis

    Ingår i PLoS ONE, 2019.

    Open access
  • Virtanen, Petra; Wäneskog, Marcus; Koskiniemi, Sanna

    Class II contact‐dependent growth inhibition (CDI) systems allow for broad‐range cross‐species toxin delivery within the Enterobacteriaceae family

    Ingår i Molecular Microbiology, s. 1109-1125, 2019.

    Open access
  • Liu, Jingyi; Fu, Zhirong; Hellman, Lars; Svärd, Staffan G.

    Cleavage specificity of recombinant Giardia intestinalis cysteine proteases: Degradation of immunoglobulins and defensins

    Ingår i Molecular and biochemical parasitology (Print), s. 29-38, 2019.

  • Rajan, Meenu Rohini; Sotak, Matus; Barrenäs, Fredrik; Shen, Tong et al.

    Comparative analysis of obesity-related cardiometabolic and renal biomarkers in human plasma and serum

    Ingår i Scientific Reports, 2019.

    Open access
  • Behra, Phani Rama Krishna; Pettersson, Fredrik; Das, Sarbashis; Dasgupta, Santanu et al.

    Comparative genomics of Mycobacterium mucogenicum and Mycobacterium neoaurum clade members emphasizing tRNA and non-coding RNA

    Ingår i BMC Evolutionary Biology, 2019.

    Open access
  • Hård, Joanna; Al Hakim, Ezeddin; Kindblom, Marie; Björklund, Åsa K. et al.

    Conbase: a software for unsupervised discovery of clonal somatic mutations in single cells through read phasing

    Ingår i Genome Biology, 2019.

    Open access
  • Martijn, Joran; Lind, Anders E.; Schön, Max E.; Spiertz, Ian et al.

    Confident phylogenetic identification of uncultured prokaryotes through long read amplicon sequencing of the 16S-ITS-23S rRNA operon

    Ingår i Environmental Microbiology, s. 2485-2498, 2019.

    Open access
  • Shebanits, Kateryna; Günther, Torsten; Johansson, Anna C. V.; Maqbool, Khurram et al.

    Copy number determination of the gene for the human pancreatic polypeptide receptor NPY4R using read depth analysis and droplet digital PCR.

    Ingår i BMC Biotechnology, 2019.

    Open access
  • Cook, Naomi L.; Pjanic, Milos; Emmerich, Andrew G.; Rao, Abhiram S. et al.

    CRISPR-Cas9-mediated knockout of SPRY2 in human hepatocytes leads to increased glucose uptake and lipid droplet accumulation

    Ingår i BMC Endocrine Disorders, 2019.

    Open access
  • Baier, Florian; Hong, Nansook; Yang, Gloria; Pabis, Anna et al.

    Cryptic genetic variation shapes the adaptive evolutionary potential of enzymes

    Ingår i eLIFE, 2019.

    Open access
  • Stsiapanava, Alena; Selmer, Maria

    Crystal structure of ErmE-23S rRNA methyltransferase in macrolide resistance

    Ingår i Scientific Reports, 2019.

    Open access
  • Elias-Wolff, Federico; Lindén, Martin; Lyubartsev, Alexander P.; Brandt, Erik G.

    Curvature sensing by cardiolipin in simulated buckled membranes

    Ingår i Soft Matter, s. 792-802, 2019.

    Open access
  • Skiniemi, Sannako; Virtanen, Petra

    Death from within

    Ingår i Nature, s. 449-450, 2019.

  • Rawle, Robert J.; Giraldo, Ana M. Villamil; Boxer, Steven G.; Kasson, Peter M.

    Detecting and Controlling Dye Effects in Single-Virus Fusion Experiments

    Ingår i Biophysical Journal, s. 445-452, 2019.

  • Walz, Marie-Madeleine; Van der Spoel, David

    Direct Link between Structure, Dynamics, and Thermodynamics in Molten Salts

    Ingår i The Journal of Physical Chemistry C, s. 25596-25602, 2019.

  • Sabantsev, Anton; Levendosky, Robert F.; Zhuang, Xiaowei; Bowman, Gregory D. et al.

    Direct observation of coordinated DNA movements on the nucleosome during chromatin remodelling

    Ingår i Nature Communications, 2019.

    Open access
  • Zyubko, Tatyana; Serebryakova, Marina; Andreeva, Julia; Metelev, Mikhail et al.

    Efficient in vivo synthesis of lasso peptide pseudomycoidin proceeds in the absence of both the leader and the leader peptidase

    Ingår i Chemical Science, s. 9699-9707, 2019.

    Open access