Publikationer

  • Moody, Edmund R. R.; Mahendrarajah, Tara A.; Dombrowski, Nina; Clark, James W. et al.

    An estimate of the deepest branches of the tree of life from ancient vertically evolving genes

    Ingår i eLIFE, 2022.

  • Akula, Srinivas; Hellman, Lars; Aviles, Francesc Xavier; Wernersson, Sara

    Analysis of the mast cell expressed carboxypeptidase A3 and its structural and evolutionary relationship to other vertebrate carboxypeptidases

    Ingår i Developmental and Comparative Immunology, 2022.

    Open access
  • Krakovka, Sascha; Ribacke, Ulf; Miyamoto, Yukiko; Eckmann, Lars et al.

    Characterization of Metronidazole-Resistant Giardia intestinalis Lines by Comparative Transcriptomics and Proteomics

    Ingår i Frontiers in Microbiology, 2022.

    Open access
  • Åqvist, Johan

    Computer Simulations Reveal an Entirely Entropic Activation Barrier for the Chemical Step in a Designer Enzyme

    Ingår i ACS Catalysis, s. 1452-1460, 2022.

    Open access
  • Kierczak, Marcin; Rafati, Nima; Höglund, Julia; Gourlé, Hadrien et al.

    Contribution of rare whole-genome sequencing variants to plasma protein levels and the missing heritability

    Ingår i Nature Communications, 2022.

    Open access
  • Søndergaard Stenum, Thomas; Holmqvist, Erik

    CsrA enters Hfq's territory: Regulation of a base-pairing small RNA

    Ingår i Molecular Microbiology, s. 4-9, 2022.

    Open access
  • Metelev, Mikhail; Lundin, Erik; Volkov, Ivan; Gynna, Arvid H. et al.

    Direct measurements of mRNA translation kinetics in living cells

    Ingår i Nature Communications, 2022.

    Open access
  • Miranda-Pastoriza, Dario; Bernardez, Rodrigo; Azuaje, Jhonny; Prieto-Diaz, Ruben et al.

    Exploring Non-orthosteric Interactions with a Series of Potent and Selective A(3) Antagonists

    Ingår i ACS Medicinal Chemistry Letters, s. 243-249, 2022.

    Open access
  • Ryu, Jinhye; Fu, Zhirong; Akula, Srinivas; Olsson, Anna-Karin et al.

    Extended cleavage specificity of a Chinese alligator granzyme B homologue, a strict Glu-ase in contrast to the mammalian Asp-ases

    Ingår i Developmental and Comparative Immunology, 2022.

    Open access
  • Diesend, Jan; Birkedal, Ulf; Kjellin, Jonas; Zhang, Jingwen et al.

    Fractional 2 '-O-methylation in the ribosomal RNA of Dictyostelium discoideum supports ribosome heterogeneity in Amoebozoa

    Ingår i Scientific Reports, 2022.

    Open access
  • Ponnuvel, Kangayam M.; de Miranda, Joachim R.; Terenius, Olle; Li, Wenli et al.

    Genetic characterisation of an Iflavirus associated with a vomiting disease in the Indian tropical tasar silkworm, Antheraea mylitta

    Ingår i Virus Research, 2022.

    Open access
  • Okmane, Laura; Nestor, Gustav; Jakobsson, Emma; Xu, Bingze et al.

    Glucomannan and beta-glucan degradation by Mytilus edulis Cel45A: Crystal structure and activity comparison with GH45 subfamily A, B and C

    Ingår i Carbohydrate Polymers, 2022.

  • Irrgang, M. Eric; Davis, Caroline; Kasson, Peter M.

    gmxapi: A GROMACS-native Python interface for molecular dynamics with ensemble and plugin support

    Ingår i PloS Computational Biology, 2022.

    Open access
  • van Rijn, Jorik M; Eriksson, Jens; Grüttner, Jana; Sundbom, Magnus et al.

    High-Definition DIC Imaging Uncovers Transient Stages of Pathogen Infection Cycles on the Surface of Human Adult Stem Cell-Derived Intestinal Epithelium.

    Ingår i mBio, 2022.

    Open access
  • Padhi, Avinash; Srivastava, Ankit; Ramesh, Abarajitha; Ehrstrom, Marcus et al.

    IL-22 Downregulates Peptidylarginine Deiminase-1 in Human Keratinocytes: Adding Another Piece to the IL-22 Puzzle in Epidermal Barrier Formation

    Ingår i Journal of Investigative Dermatology, s. 333-342.e6, 2022.

  • Roshanbin, Sahar; Xiong, Mengfei; Hultqvist, Greta; Soderberg, Linda et al.

    In vivo imaging of alpha-synuclein with antibody-based PET

    Ingår i Neuropharmacology, 2022.

    Open access
  • Yau, Anthony C. Y.; Globisch, Maria A.; Onyeogaziri, Favour; Conze, Lei Liu et al.

    Inflammation and neutrophil extracellular traps in cerebral cavernous malformation

    Ingår i Cellular and Molecular Life Sciences (CMLS), 2022.

    Open access
  • Lauren, Ida; Havervall, Sebastian; Ng, Henry; Lord, Martin et al.

    Long-term SARS-CoV-2-specific and cross-reactive cellular immune responses correlate with humoral responses, disease severity, and symptomatology

    Ingår i Immunity, Inflammation and Disease, 2022.

    Open access
  • Garbulowski, Mateusz; Smolinska Garbulowska, Karolina; Cabuk, Ugur; Younes, Sara et al.

    Machine Learning-Based Analysis of Glioma Grades Reveals Co-Enrichment

    Ingår i Cancers, 2022.

    Open access
  • Bellisario, Alfredo; Maia, Filipe; Ekeberg, Tomas

    Noise reduction and mask removal neural network for X-ray single-particle imaging

    Ingår i Journal of applied crystallography, s. 122-132, 2022.

    Open access
  • Zhang, Yanyu; Doulabi, Ehsan Manouchehri; Herre, Melanie; Cedervall, Jessica et al.

    Platelet-Derived PDGFB Promotes Recruitment of Cancer-Associated Fibroblasts, Deposition of Extracellular Matrix and Tgf beta Signaling in the Tumor Microenvironment

    Ingår i Cancers, 2022.

    Open access
  • Cao, Sha; Brandis, Gerrit; Huseby, Douglas L; Hughes, Diarmaid

    Positive Selection during Niche Adaptation Results in Large-Scale and Irreversible Rearrangement of Chromosomal Gene Order in Bacteria

    Ingår i Molecular biology and evolution, 2022.

    Open access
  • Paivandy, Aida; Akula, Srinivas; Lara, Sandra; Fu, Zhirong et al.

    Quantitative In-Depth Transcriptome Analysis Implicates Peritoneal Macrophages as Important Players in the Complement and Coagulation Systems

    Ingår i International Journal of Molecular Sciences, 2022.

    Open access
  • Raine, Amanda; Lundmark, Anders; Annett, Alva; Wiman, Ann-Christin et al.

    scSPLAT, a scalable plate-based protocol for single cell WGBS library preparation

    Ingår i Scientific Reports, 2022.

    Open access
  • Marklund, Emil; Mao, Guanzhong; Yuan, Jinwen; Zikrin, Spartak et al.

    Sequence specificity in DNA binding is mainly governed by association

    Ingår i Science, s. 442-445, 2022.

    Open access
  • Wei, Shushu; Thakur, Naveen; Ray, Arka P.; Jin, Beining et al.

    Slow conformational dynamics of the human A(2A) adenosine receptor are temporally ordered

    Ingår i Structure, s. 329-, 2022.

  • Lu, Lu; Åkerbladh, Linda; Ahmad, Shabbir; Konda, Vivek et al.

    Synthesis and in vitro biological evaluation of quinolinyl pyrimidines targeting type II NADH-dehydrogenase (NDH-2)

    Ingår i ACS Infectious Diseases, s. 482-498, 2022.

    Open access
  • Pham, Em Canh; Truong, Tuyen Ngoc; Dong, Nguyen Hanh; Vo, Duc Duy et al.

    Synthesis of a Series of Novel 2-Amino-5-substituted 1,3,4-oxadiazole and 1,3,4-thiadiazole Derivatives as Potential Anticancer, Antifungal and Antibacterial Agents

    Ingår i Medicinal chemistry, s. 558-573, 2022.

  • Dawe, Louise N.; Manuel Garcia-Ruiz, Juan; Hadju, Janos; McIntyre, Garry J. et al.

    Teaching and Education highlighted

    Ingår i Journal of applied crystallography, s. 215-217, 2022.

    Open access
  • Koenekoop, Lucien; van der Ent, Florian; Purg, Miha; Åqvist, Johan

    The Activation Parameters of a Cold-Adapted Short Chain Dehydrogenase Are Insensitive to Enzyme Oligomerization

    Ingår i Biochemistry, s. 514-522, 2022.

  • Lara, Sandra; Akula, Srinivas; Fu, Zhirong; Olsson, Anna-Karin et al.

    The Human Monocyte-A Circulating Sensor of Infection and a Potent and Rapid Inducer of Inflammation

    Ingår i International Journal of Molecular Sciences, 2022.

    Open access
  • Krause, Susanne; Gfrerer, Sabrina; von Kügelgen, Andriko; Reuse, Carsten et al.

    The importance of biofilm formation for cultivation of a Micrarchaeon and its interactions with its Thermoplasmatales host

    Ingår i Nature Communications, 2022.

    Open access
  • Stratmann, Svea; Yones, Sara A.; Garbulowski, Mateusz; Sun, Jitong et al.

    Transcriptomic analysis reveals proinflammatory signatures associated with acute myeloid leukemia progression

    Ingår i Blood Advances SUPPLEMENTAL INFORMATION FOR: Transcriptomic analysis reveals pro-inflammatory signatures associated with acute myeloid leukemia progression SUPPLEMENTARY MATERIAL: Transcriptomic analysis reveals pro-inflammatory signatures associated with acute myeloid leukemia progression, s. 152-164, 2022.

    Open access
  • Nguyen, Diem; Peona, Valentina; Unneberg, Per; Suh, Alexander et al.

    Transposon- and Genome Dynamics in the Fungal Genus Neurospora: Insights from Nearly Gapless Genome Assemblies

    Ingår i Fungal Genetics Reports, 2022.

  • Luttens, Andreas; Gullberg, Hjalmar; Abdurakhmanov, Eldar; Vo, Duy Duc et al.

    Ultralarge Virtual Screening Identifies SARS-CoV-2 Main Protease Inhibitors with Broad-Spectrum Activity against Coronaviruses

    Ingår i Journal of the American Chemical Society, s. 2905-2920, 2022.

    Open access
  • Majellaro, María; Jespers, Willem; Crespo, Abel; Núñez, María J. et al.

    3,4-Dihydropyrimidin-2(1H)-ones as Antagonists of the Human A2B Adenosine Receptor: Optimization, Structure–Activity Relationship Studies, and Enantiospecific Recognition

    Ingår i Journal of Medicinal Chemistry, s. 458-480, 2021.

  • Ayyer, Kartik; Xavier, P. Lourdu; Bielecki, Johan; Shen, Zhou et al.

    3D diffractive imaging of nanoparticle ensembles using an x-ray laser

    Ingår i Operator Theory, s. 15-23, 2021.

    Open access
  • Reimegård, Johan; Tarbier, Marcel; Danielsson, Marcus; Schuster, Jens et al.

    A combined approach for single-cell mRNA and intracellular protein expression analysis

    Ingår i Communications Biology, 2021.

    Open access
  • Rojas-Lopez, Laura; Krakovka, Sascha; Einarsson, Elin; Ribacke, Ulf et al.

    A Detailed Gene Expression Map of Giardia Encystation

    Ingår i Genes, s. 1932-, 2021.

    Open access
  • Manzetti, Sergio; Trounev, Alexander

    A Korteweg-DeVries type model for helical soliton solutions for quantum and continuum phenomena

    Ingår i International Journal of Modern Physics C, 2021.

  • Klimesova, Eva; Kulyk, Olena; Hoque, Ziaul; Roos, Andreas Hult et al.

    A multipurpose end-station for atomic, molecular and optical sciences and coherent diffractive imaging at ELI beamlines

    Ingår i The European Physical Journal Special Topics, s. 4183-4194, 2021.

    Open access
  • Felletti, Michele; Romilly, Cedric; Wagner, Gerhart E. H.; Jonas, Kristina

    A nascent polypeptide sequence modulates DnaA translation elongation in response to nutrient availability

    Ingår i eLIFE, 2021.

    Open access
  • Bender, Brian J.; Gahbauer, Stefan; Luttens, Andreas; Lyu, Jiankun et al.

    A practical guide to large-scale docking

    Ingår i Nature Protocols, s. 4799-4832, 2021.

  • Coleman, Gareth A.; Davin, Adrian A.; Mahendrarajah, Tara A.; Szantho, Lenard L. et al.

    A rooted phylogeny resolves early bacterial evolution

    Ingår i Science, 2021.

  • Regadas, Isabel; Dahlberg, Olle; Vaid, Roshan; Ho, Oanh et al.

    A unique histone 3 lysine 14 chromatin signature underlies tissue-specific gene regulation

    Ingår i Molecular Cell, s. 1766-1780.e10, 2021.

    Open access
  • Kjellin, Jonas; Avesson, Lotta; Reimegård, Johan; Liao, Zhen et al.

    Abundantly expressed class of noncoding RNAs conserved through the multicellular evolution of dictyostelid social amoebas

    Ingår i Genome Research, s. 436-447, 2021.

    Open access
  • Gapsys, Vytautas; Yildirim, Ahmet; Aldeghi, Matteo; Khalak, Yuriy et al.

    Accurate absolute free energies for ligand-protein binding based on non-equilibrium approaches

    Ingår i Communications Chemistry, 2021.

    Open access
  • Liu, Shanlin; Westbury, Michael, V; Dussex, Nicolas; Mitchell, Kieren J. et al.

    Ancient and modem genomes unravel the evolutionary history of the rhinoceros family

    Ingår i Cell, s. 4874-4885.e16, 2021.

    Open access
  • Benediktsdottir, Andrea; Lu, Lu; Cao, Sha; Zamaratski, Edouard et al.

    Antibacterial sulfonimidamide-based oligopeptides as type I signal peptidase inhibitors: Synthesis and biological evaluation

    Ingår i European Journal of Medicinal Chemistry, 2021.

    Open access
  • Fritzell, Peter; Hägg, Olle; Bergström, Tomas; Jönsson, Bodil et al.

    Antibiotics should not be used for back/leg pain

    Ingår i Acta Orthopaedica, s. 244-246, 2021.

    Open access