Publikationer

  • Manzetti, Sergio; Trounev, Alexander

    A Korteweg-DeVries type model for helical soliton solutions for quantum and continuum phenomena

    Ingår i International Journal of Modern Physics C, 2021.

  • Kjellin, Jonas; Avesson, Lotta; Reimegård, Johan; Liao, Zhen et al.

    Abundantly expressed class of noncoding RNAs conserved through the multicellular evolution of dictyostelid social amoebas

    Ingår i Genome Research, s. 436-447, 2021.

    Open access
  • Zaghlool, Ammar; Niazi, Adnan; Björklund, Åsa K.; Orzechowski Westholm, Jakub et al.

    Characterization of the nuclear and cytosolic transcriptomes in human brain tissue reveals new insights into the subcellular distribution of RNA transcripts

    Ingår i Scientific Reports, 2021.

    Open access
  • Brooks, Charles L., III; Case, David A.; Plimpton, Steve; Roux, Benoit et al.

    Classical molecular dynamics

    Ingår i Journal of Chemical Physics, 2021.

  • Thulasingam, Madhuranayaki; Orellana, Laura; Nji, Emmanuel; Ahmad, Shabbir et al.

    Crystal structures of human MGST2 reveal synchronized conformational changes regulating catalysis

    Ingår i Nature Communications, 2021.

    Open access
  • Rocha, Elerson Matos; Marinotti, Osvaldo; Serrao, Deidre Machado; Correa, Laura Viana et al.

    Culturable bacteria associated with Anopheles darlingi and their paratransgenesis potential

    Ingår i Malaria Journal, 2021.

    Open access
  • Hewitt, Graeme; Borel, Valerie; Segura-Bayona, Sandra; Takaki, Tohru et al.

    Defective ALC1 nucleosome remodeling confers PARPi sensitization and synthetic lethality with HRD

    Ingår i Molecular Cell, s. 767-783.e11, 2021.

    Open access
  • Gawryluk, Ryan M. R.; Stairs, Courtney W.

    Diversity of electron transport chains in anaerobic protists

    Ingår i Biochimica et Biophysica Acta - Bioenergetics, 2021.

    Open access
  • Emery-Corbin, Samantha J.; Hamey, Joshua J.; Balan, Balu; Rojas-López, Laura et al.

    Eukaryote-conserved histone post-translational modification landscape in Giardia duodenalis revealed by mass spectrometry

    Ingår i International Journal of Parasitology, s. 225-239, 2021.

  • Berryhill, Brandon A.; Huseby, Douglas L; McCall, Ingrid C.; Hughes, Diarmaid et al.

    Evaluating the potential efficacy and limitations of a phage for joint antibiotic and phage therapy of Staphylococcus aureus infections

    Ingår i Proceedings of the National Academy of Sciences of the United States of America, 2021.

    Open access
  • Jones, Allison M.; Virtanen, Petra; Hammarlöf, Disa L.; Allen, William J. et al.

    Genetic Evidence for SecY Translocon-Mediated Import of Two Contact-Dependent Growth Inhibition (CDI) Toxins

    Ingår i mBio, 2021.

    Open access
  • Stratmann, Svea; Yones, Sara A.; Mayrhofer, Markus; Norgren, Nina et al.

    Genomic characterization of relapsed acute myeloid leukemia reveals novel putative therapeutic targets

    Ingår i Blood Advances SUPPLEMENTAL INFORMATION FOR: Genomic characterization of adult and pediatric relapsed acute myeloid leukemia reveals novel therapeutic targets, s. 900-912, 2021.

  • Nencetti, Susanna; Cuffaro, Doretta; Nuti, Elisa; Ciccone, Lidia et al.

    Identification of histone deacetylase inhibitors with (arylidene)aminoxy scaffold active in uveal melanoma cell lines

    Ingår i Journal of enzyme inhibition and medicinal chemistry (Print), s. 34-47, 2021.

    Open access
  • Fleetwood, Oliver; Carlsson, Jens; Delemotte, Lucie

    Identification of ligand-specific G protein-coupled receptor states and prediction of downstream efficacy via data-driven modeling

    Ingår i eLIFE, 2021.

    Open access
  • Lawson, Michael; Elf, Johan

    Imaging-based screens of pool-synthesized cell libraries

    Ingår i Nature Methods, s. 358-365, 2021.

  • Doerr, Anne; Foschepoth, David; Forster, Anthony C.; Danelon, Christophe

    In vitro synthesis of 32 translation-factor proteins from a single template reveals impaired ribosomal processivity

    Ingår i Scientific Reports, 2021.

    Open access
  • Hays, Jennifer M.; Boland, Emily; Kasson, Peter M.

    Inference of Joint Conformational Distributions from Separately Acquired Experimental Measurements

    Ingår i Journal of Physical Chemistry Letters, s. 1606-1611, 2021.

  • Garbulowski, Mateusz; Smolinska Garbulowska, Karolina; Diamanti, Klev; Pan, Gang et al.

    Interpretable Machine Learning Reveals Dissimilarities Between Subtypes of Autism Spectrum Disorder

    Ingår i Frontiers in Genetics, 2021.

    Open access
  • Ramesh, Malavika

    Intracellular localization of the mycobacterial stressosome complex

    Ingår i Scientific Reports, 2021.

    Open access
  • Marchesini, Stefano; Shapiro, David; Maia, Filipe

    Introduction to the special issue on Ptychography: software and technical developments

    Ingår i Journal of applied crystallography, s. 384-385, 2021.

    Open access
  • Martinez, Julien; Klasson, Lisa; Welch, John J.; Jiggins, Francis M.

    Life and Death of Selfish Genes: Comparative Genomics Reveals the Dynamic Evolution of Cytoplasmic Incompatibility

    Ingår i Molecular biology and evolution, s. 2-15, 2021.

    Open access
  • Matricon, Pierre; Suresh, R. Rama; Gao, Zhan-Guo; Panel, Nicolas et al.

    Ligand design by targeting a binding site water

    Ingår i Chemical Science, s. 960-968, 2021.

    Open access
  • Crean, Rory M.; Biler, Michal; van der Kamp, Marc W.; Hengge, Alvan C. et al.

    Loop Dynamics and Enzyme Catalysis in Protein Tyrosine Phosphatases

    Ingår i Journal of the American Chemical Society, s. 3830-3845, 2021.

    Open access
  • Palm, Anna-Karin E.; Kleinau, Sandra

    Marginal zone B cells: From housekeeping function to autoimmunity?

    Ingår i Journal of Autoimmunity, 2021.

    Open access
  • Walz, Marie-Madeleine; Van der Spoel, David

    Microscopic origins of conductivity in molten salts unraveled by computer simulations

    Ingår i Communications Chemistry, 2021.

    Open access
  • van der Valk, Tom; Pecnerova, Patricia; Diez-del-Molino, David; Bergström, Anders et al.

    Million-year-old DNA sheds light on the genomic history of mammoths

    Ingår i Nature, s. 265-269, 2021.

  • Soltan-Alinejad, Parisa; Rafinejad, Javad; Dabiri, Farrokh; Onorati, Piero et al.

    Molecular analysis of the mitochondrial markers COI, 12S rDNA and 16S rDNA for six species of Iranian scorpions

    Ingår i BMC Research Notes, 2021.

    Open access
  • Brandis, Gerrit; Granström, Susanna; Leber, Anna T.; Bartke, Katrin et al.

    Mutant RNA polymerase can reduce susceptibility to antibiotics via ppGpp-independent induction of a stringent-like response

    Ingår i Journal of Antimicrobial Chemotherapy, s. 606-615, 2021.

    Open access
  • Wannberg, Johan; Gising, Johan; Lindman, Jens; Salander, Jessica et al.

    N-(Methyloxycarbonyl)thiophene sulfonamides as high affinity AT2 receptor ligands

    Ingår i Bioorganic & Medicinal Chemistry, 2021.

  • Nitzsche, Anja; Pietilä, Riikka; Love, Dominic T.; Testini, Chiara et al.

    Paladin is a phosphoinositide phosphatase regulating endosomal VEGFR2 signalling and angiogenesis

    Ingår i EMBO Reports, 2021.

    Open access
  • Haldar, Sourav; Okamoto, Kenta; Dunning, Rebecca A.; Kasson, Peter M.

    Precise Triggering and Chemical Control of Single-Virus Fusion within Endosomes

    Ingår i Journal of Virology, 2021.

  • Daurer, Benedikt J.; Sala, Simone; Hantke, Max; Reddy, Hemanth K.N. et al.

    Ptychographic wavefront characterization for single-particle imaging at x-ray lasers

    Ingår i Optica, s. 551-562, 2021.

    Open access
  • Kördel, Mikael; Svenda, Martin; Reddy, Hemanth K. N.; Fogelqvist, Emelie et al.

    Quantitative conversion of biomass in giant DNA virus infection

    Ingår i Scientific Reports, 2021.

    Open access
  • Aguirre Rivera, Javier; Larsson, Jimmy; Volkov, Ivan; Seefeldt, A. Carolin et al.

    Real-time measurements of aminoglycoside effects on protein synthesis in live cells

    Ingår i Proceedings of the National Academy of Sciences of the United States of America, 2021.

    Open access
  • Praski Alzrigat, Lisa; Huseby, Douglas L; Brandis, Gerrit; Hughes, Diarmaid

    Resistance/fitness trade-off is a barrier to the evolution of MarR inactivation mutants in Escherichia coli

    Ingår i Journal of Antimicrobial Chemotherapy, s. 77-83, 2021.

    Open access
  • Garbulowski, Mateusz; Diamanti, Klev; Smolinska, Karolina; Baltzer, Nicholas et al.

    R.ROSETTA: an interpretable machine learning framework

    Ingår i BMC Bioinformatics, 2021.

    Open access
  • Reddy Vanga, Sudarsana; Åqvist, Johan; Gutiérrez-de-Terán, Hugo

    Structural Basis of Inhibition of Human Insulin-Regulated Aminopeptidase (IRAP) by Benzopyran-based Inhibitors

    Ingår i Frontiers in Molecular Biosciences, 2021.

    Open access
  • Guo, Xiaohu; Söderholm, Annika; Kanchugal Puttaswamy, Sandesh; Isaksen, Geir V et al.

    Structure and mechanism of a phage-encoded SAM lyase revises catalytic function of enzyme family

    Ingår i eLIFE, 2021.

    Open access
  • Strawbridge, Rona J.; Johnston, Keira J. A.; Bailey, Mark E. S.; Baldassarre, Damiano et al.

    The overlap of genetic susceptibility to schizophrenia and cardiometabolic disease can be used to identify metabolically different groups of individuals

    Ingår i Scientific Reports, 2021.

    Open access
  • Han, Huijong; Round, Ekaterina; Schubert, Robin; Gül, Yasmin et al.

    The XBI BioLab for life science experiments at the European XFEL

    Ingår i Journal of applied crystallography, s. 7-21, 2021.

    Open access
  • Xu, Feifei; Jex, Aaron; Svärd, Staffan

    A chromosome-scale reference genome for Giardia intestinalis WB

    Ingår i Scientific Data, 2020.

    Open access
  • Cavalli, Marco; Diamanti, Klev; Pan, Gang; Spalinskas, Rapolas et al.

    A Multi-Omics Approach to Liver Diseases: Integration of Single Nuclei Transcriptomics with Proteomics and HiCap Bulk Data in Human Liver

    Ingår i Omics, s. 180-194, 2020.

    Open access
  • Huang, Zhaobin; Petersen, Jillian M.; Martijn, Joran; Ettema, Thijs J. G. et al.

    A novel alphaproteobacterium with a small genome identified from the digestive gland of multiple species of abalone

    Ingår i Environmental Microbiology Reports, s. 387-395, 2020.

  • Van der Spoel, David; Henschel, Henning; van Maaren, Paul J.; Ghahremanpour, Mohammad M. et al.

    A potential for molecular simulation of compounds with linear moieties

    Ingår i Journal of Chemical Physics, 2020.

    Open access
  • Svensson, Daniel; Rentoft, Matilda; Dahlin, Anna M.; Lundholm, Emma et al.

    A whole-genome sequenced control population in northern Sweden reveals subregional genetic differences

    Ingår i PLoS ONE, 2020.

    Open access
  • Okamoto, Kenta; Ferreira, Ricardo J.; Larsson, Daniel S D; Maia, Filipe R.N.C. et al.

    Acquired Functional Capsid Structures in Metazoan Totivirus-like dsRNA Virus

    Ingår i Structure, s. 888-+, 2020.

  • Raehtz, Kevin D.; Barrenäs, Fredrik; Xu, Cuiling; Busman-Sahay, Kathleen et al.

    African green monkeys avoid SIV disease progression by preventing intestinal dysfunction and maintaining mucosal barrier integrity

    Ingår i PLoS Pathogens, 2020.

    Open access
  • Assalauova, Dameli; Kim, Young Yong; Bobkov, Sergey; Khubbutdinov, Ruslan et al.

    An advanced workflow for single-particle imaging with the limited data at an X-ray free-electron laser

    Ingår i IUCrJ, s. 1102-1113, 2020.

    Open access
  • Onsbring, Henning; Tice, Alexander K.; Barton, Brandon T.; Brown, Matthew W. et al.

    An efficient single-cell transcriptomics workflow for microbial eukaryotes benchmarked on Giardia intestinalis cells

    Ingår i BMC Genomics, 2020.

    Open access
  • Henschel, Henning; Van der Spoel, David

    An Intuitively Understandable Quality Measure for Theoretical Vibrational Spectra

    Ingår i Journal of Physical Chemistry Letters, s. 5471-5475, 2020.

    Open access