Publikationer

  • Majellaro, María; Jespers, Willem; Crespo, Abel; Núñez, María J. et al.

    3,4-Dihydropyrimidin-2(1H)-ones as Antagonists of the Human A2B Adenosine Receptor: Optimization, Structure–Activity Relationship Studies, and Enantiospecific Recognition

    Ingår i Journal of Medical Chemistry, s. 458-480, 2021.

  • Ayyer, Kartik; Xavier, P. Lourdu; Bielecki, Johan; Shen, Zhou et al.

    3D diffractive imaging of nanoparticle ensembles using an x-ray laser

    Ingår i Operator Theory, s. 15-23, 2021.

    Open access
  • Reimegård, Johan; Tarbier, Marcel; Danielsson, Marcus; Schuster, Jens et al.

    A combined approach for single-cell mRNA and intracellular protein expression analysis

    Ingår i Communications Biology, 2021.

    Open access
  • Manzetti, Sergio; Trounev, Alexander

    A Korteweg-DeVries type model for helical soliton solutions for quantum and continuum phenomena

    Ingår i International Journal of Modern Physics C, 2021.

  • Coleman, Gareth A.; Davin, Adrian A.; Mahendrarajah, Tara A.; Szantho, Lenard L. et al.

    A rooted phylogeny resolves early bacterial evolution

    Ingår i Science, 2021.

  • Regadas, Isabel; Dahlberg, Olle; Vaid, Roshan; Ho, Oanh et al.

    A unique histone 3 lysine 14 chromatin signature underlies tissue-specific gene regulation

    Ingår i Molecular Cell, s. 1766-1780.e10, 2021.

    Open access
  • Kjellin, Jonas; Avesson, Lotta; Reimegård, Johan; Liao, Zhen et al.

    Abundantly expressed class of noncoding RNAs conserved through the multicellular evolution of dictyostelid social amoebas

    Ingår i Genome Research, s. 436-447, 2021.

    Open access
  • Gapsys, Vytautas; Yildirim, Ahmet; Aldeghi, Matteo; Khalak, Yuriy et al.

    Accurate absolute free energies for ligand-protein binding based on non-equilibrium approaches

    Ingår i Communications Chemistry, 2021.

    Open access
  • Benediktsdottir, Andrea; Lu, Lu; Cao, Sha; Zamaratski, Edouard et al.

    Antibacterial sulfonimidamide-based oligopeptides as type I signal peptidase inhibitors: Synthesis and biological evaluation

    Ingår i European Journal of Medicinal Chemistry, 2021.

    Open access
  • Le, Thanh Thanh; Le, Phung Thi Kim; Dam, Hai Thi Thanh; Vo, Duc Duy et al.

    Anticancer Activity of New 1,2,3-Triazole-Amino Acid Conjugates

    Ingår i Molbank, 2021.

    Open access
  • Kapla, Jon; Rodriguez Espigares, Ismael; Ballante, Flavio; Selent, Jana et al.

    Can molecular dynamics simulations improve the structural accuracy and virtual screening performance of GPCR models?

    Ingår i PloS Computational Biology, 2021.

    Open access
  • Zaghlool, Ammar; Niazi, Adnan; Björklund, Åsa K.; Orzechowski Westholm, Jakub et al.

    Characterization of the nuclear and cytosolic transcriptomes in human brain tissue reveals new insights into the subcellular distribution of RNA transcripts

    Ingår i Scientific Reports, 2021.

    Open access
  • Brooks, Charles L., III; Case, David A.; Plimpton, Steve; Roux, Benoit et al.

    Classical molecular dynamics

    Ingår i Journal of Chemical Physics, 2021.

  • Eaglesfield, Ross; Madsen, Mary Ann; Sanyal, Suparna; Reboud, Julien et al.

    Cotranslational recruitment of ribosomes in protocells recreates a translocon-independent mechanism of proteorhodopsin biogenesis

    Ingår i ISCIENCE, 2021.

    Open access
  • Thulasingam, Madhuranayaki; Orellana, Laura; Nji, Emmanuel; Ahmad, Shabbir et al.

    Crystal structures of human MGST2 reveal synchronized conformational changes regulating catalysis

    Ingår i Nature Communications, 2021.

    Open access
  • Rocha, Elerson Matos; Marinotti, Osvaldo; Serrao, Deidre Machado; Correa, Laura Viana et al.

    Culturable bacteria associated with Anopheles darlingi and their paratransgenesis potential

    Ingår i Malaria Journal, 2021.

    Open access
  • Hewitt, Graeme; Borel, Valerie; Segura-Bayona, Sandra; Takaki, Tohru et al.

    Defective ALC1 nucleosome remodeling confers PARPi sensitization and synthetic lethality with HRD

    Ingår i Molecular Cell, s. 767-783.e11, 2021.

    Open access
  • Cruz-Lopez, Olga; Ner, Matilde; Nerin-Fonz, Francho; Jimenez-Martinez, Yaiza et al.

    Design, synthesis, HER2 inhibition and anticancer evaluation of new substituted 1,5-dihydro-4,1-benzoxazepines

    Ingår i Journal of enzyme inhibition and medicinal chemistry (Print), s. 1553-1563, 2021.

    Open access
  • Jagadish, Anupama; Khajje, Diksha; Tony, Merinrose; Nilsson, Anna et al.

    Development and optimization of a TaqMan assay for Nosema bombycis, causative agent of pebrine disease in Bombyx mori silkworm, based on the β-tubulin gene

    Ingår i Journal of Microbiological Methods, 2021.

    Open access
  • Seefeldt, A. Carolin; Aguirre Rivera, Javier; Johansson, Magnus

    Direct measurements of erythromycin’s effect on protein synthesis kinetics in living bacterial cells

    Ingår i Journal of Molecular Biology, 2021.

    Open access
  • Gawryluk, Ryan M. R.; Stairs, Courtney W.

    Diversity of electron transport chains in anaerobic protists

    Ingår i Biochimica et Biophysica Acta - Bioenergetics, 2021.

    Open access
  • Sandholt, Arnar K. S.; Xu, Feifei; Söderlund, Robert; Lundén, Anna et al.

    Dual RNA-Seq transcriptome analysis of chicken macrophage-like cells (HD11) infected in vitro with Eimeria tenella

    Ingår i Parasitology, s. 712-725, 2021.

    Open access
  • Fu, Zhirong; Akula, Srinivas; Qiao, Chang; Ryu, Jinhye et al.

    Duodenases are a small subfamily of ruminant intestinal serine proteases that have undergone a remarkable diversification in cleavage specificity

    Ingår i PLOS ONE, 2021.

    Open access
  • Shehu, Amarda; Van der Spoel, David

    Editorial overview: Theory and simulation and their new friends

    Ingår i Current opinion in structural biology, s. III-V, 2021.

  • Wäneskog, Marcus; Halvorsen, Tiffany; Filek, Klara; Xu, Feifei et al.

    Escherichia coli EC93 deploys two plasmid- encoded class I contact- dependent growth inhibition systems for antagonistic bacterial interactions

    Ingår i MICROBIAL GENOMICS, 2021.

    Open access
  • Pavlov, Michael; Ullman, Gustaf; Ignatova, Zoya; Ehrenberg, Måns

    Estimation of peptide elongation times from ribosome profiling spectra

    Ingår i Nucleic Acids Research, s. 5124-5142, 2021.

    Open access
  • Emery-Corbin, Samantha J.; Hamey, Joshua J.; Balan, Balu; Rojas-López, Laura et al.

    Eukaryote-conserved histone post-translational modification landscape in Giardia duodenalis revealed by mass spectrometry

    Ingår i International Journal of Parasitology, s. 225-239, 2021.

  • Berryhill, Brandon A.; Huseby, Douglas L; McCall, Ingrid C.; Hughes, Diarmaid et al.

    Evaluating the potential efficacy and limitations of a phage for joint antibiotic and phage therapy of Staphylococcus aureus infections

    Ingår i Proceedings of the National Academy of Sciences of the United States of America, 2021.

    Open access
  • Brandis, Gerrit; Gockel, Jonas; Garoff, Linnea; Guy, Lionel et al.

    Expression of the qepA1 gene is induced under antibiotic exposure

    Ingår i Journal of Antimicrobial Chemotherapy, s. 1433-1440, 2021.

    Open access
  • Bartke, Katrin; Garoff, Linnéa; Huseby, Douglas L; Brandis, Gerrit et al.

    Genetic Architecture and Fitness of Bacterial Interspecies Hybrids

    Ingår i Molecular biology and evolution, s. 1472-1481, 2021.

    Open access
  • Jones, Allison M.; Virtanen, Petra; Hammarlöf, Disa L.; Allen, William J. et al.

    Genetic Evidence for SecY Translocon-Mediated Import of Two Contact-Dependent Growth Inhibition (CDI) Toxins

    Ingår i mBio, 2021.

    Open access
  • Ahluwalia, Tarunveer S.; Prins, Bram P.; Abdollahi, Mohammadreza; Armstrong, Nicola J. et al.

    Genome-wide association study of circulating interleukin 6 levels identifies novel loci

    Ingår i Human Molecular Genetics, s. 393-409, 2021.

    Open access
  • Stratmann, Svea; Yones, Sara A.; Mayrhofer, Markus; Norgren, Nina et al.

    Genomic characterization of relapsed acute myeloid leukemia reveals novel putative therapeutic targets

    Ingår i Blood Advances SUPPLEMENTAL INFORMATION FOR: Genomic characterization of adult and pediatric relapsed acute myeloid leukemia reveals novel therapeutic targets, s. 900-912, 2021.

  • von Seth, Johanna; Dussex, Nicolas; Díez-del-Molino, David; van der Valk, Tom et al.

    Genomic insights into the conservation status of the world's last remaining Sumatran rhinoceros populations

    Ingår i Nature Communications, 2021.

    Open access
  • Nencetti, Susanna; Cuffaro, Doretta; Nuti, Elisa; Ciccone, Lidia et al.

    Identification of histone deacetylase inhibitors with (arylidene)aminoxy scaffold active in uveal melanoma cell lines

    Ingår i Journal of enzyme inhibition and medicinal chemistry (Print), s. 34-47, 2021.

    Open access
  • Fleetwood, Oliver; Carlsson, Jens; Delemotte, Lucie

    Identification of ligand-specific G protein-coupled receptor states and prediction of downstream efficacy via data-driven modeling

    Ingår i eLIFE, 2021.

    Open access
  • Wang, Xuesong; Jespers, Willem; Prieto-Diaz, Ruben; Majellaro, Maria et al.

    Identification of V6.51L as a selectivity hotspot in stereoselective A(2B) adenosine receptor antagonist recognition

    Ingår i Scientific Reports, 2021.

    Open access
  • Lawson, Michael; Elf, Johan

    Imaging-based screens of pool-synthesized cell libraries

    Ingår i Nature Methods, s. 358-365, 2021.

  • Lara, Sandra; Anania, Jessica; Virtanen, Alexander; Stenhammar, Viktoria et al.

    Importance of antibody isotypes in antitumor immunity by monocytes and complement using human-immune tumor models

    Ingår i European Journal of Immunology, s. 1218-1233, 2021.

    Open access
  • Doerr, Anne; Foschepoth, David; Forster, Anthony C.; Danelon, Christophe

    In vitro synthesis of 32 translation-factor proteins from a single template reveals impaired ribosomal processivity

    Ingår i Scientific Reports, 2021.

    Open access
  • Charbord, Jeremie; Ren, Lipeng; Sharma, Rohit B.; Johansson, Anna et al.

    In vivo screen identifies a SIK inhibitor that induces beta cell proliferation through a transient UPR

    Ingår i Nature Metabolism, s. 682-+, 2021.

  • Hays, Jennifer M.; Boland, Emily; Kasson, Peter M.

    Inference of Joint Conformational Distributions from Separately Acquired Experimental Measurements

    Ingår i Journal of Physical Chemistry Letters, s. 1606-1611, 2021.

  • Barrenäs, Fredrik; Hansen, Scott G.; Law, Lynn; Driscoll, Connor et al.

    Interleukin-15 response signature predicts RhCMV/SIV vaccine efficacy

    Ingår i PLoS Pathogens, 2021.

    Open access
  • Garbulowski, Mateusz; Smolinska Garbulowska, Karolina; Diamanti, Klev; Pan, Gang et al.

    Interpretable Machine Learning Reveals Dissimilarities Between Subtypes of Autism Spectrum Disorder

    Ingår i Frontiers in Genetics, 2021.

    Open access
  • Ramesh, Malavika; Nitharwal, Ram Gopal; Behra, Phani Rama Krishna; Pettersson, Fredrik

    Intracellular localization of the mycobacterial stressosome complex

    Ingår i Scientific Reports, 2021.

    Open access
  • Marchesini, Stefano; Shapiro, David; Maia, Filipe

    Introduction to the special issue on Ptychography: software and technical developments

    Ingår i Journal of applied crystallography, s. 384-385, 2021.

    Open access
  • Katak, Ricardo M.; Rocha, Elerson M.; Oliveira, Juan C.; Muniz, Veranilce A. et al.

    Larvicidal Activities against Aedes aegypti of Supernatant and Pellet Fractions from Cultured Bacillus spp. Isolated from Amazonian Microenvironments

    Ingår i Tropical Medicine and Infectious Disease, 2021.

    Open access
  • Fritzell, Peter; Bergström, Tomas; Andersson, Siv G. E.; Jönsson, Bodil et al.

    Letter to the editor concerning "Comment to chronic low back pain, bacterial infection and treatment with antibiotics"

    Ingår i The spine journal, s. 1233-1235, 2021.

  • Martinez, Julien; Klasson, Lisa; Welch, John J.; Jiggins, Francis M.

    Life and Death of Selfish Genes: Comparative Genomics Reveals the Dynamic Evolution of Cytoplasmic Incompatibility

    Ingår i Molecular biology and evolution, s. 2-15, 2021.

    Open access
  • Matricon, Pierre; Suresh, R. Rama; Gao, Zhan-Guo; Panel, Nicolas et al.

    Ligand design by targeting a binding site water

    Ingår i Chemical Science, s. 960-968, 2021.

    Open access